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1. Fahad Saeed and Ashfaq Khokhar, “A Domain Decomposition strategy for multiple sequence alignment of protein sequences on multiprocessors”, Submitted for review in IEEE Transactions on Parallel and Distributed Systems.

2. Fahad Saeed and Ashfaq Khokhar “Sample-Align-D: A High Performance Multiple Sequence Alignment System using Phylogenetic Sampling and Domain Decomposition”, in Proc. IEEE International Workshop on High Performance Computational Biology (HiCOMB 2008),IPDPS, Monday, April 14, 2008.

3. Fahad Saeed and Ashfaq Khokhar, “Sampler: A phylogenetic sampling based system for high performance multiple sequence alignment”, to be submitted

4. Fahad Saeed and Ashfaq Khokhar, “An overview of parallel programs for multiple sequence alignments and their limitations”, technical report, Multimedia System Laboratory, University of Illinois at Chicago.